Showing: 10 from total: 2524 publications
1731.
LFampin Derived Antimicrobial Peptide: Biophysical Characterization and Biological Implications of Composition and Structure
Bastos, M
; Adao, R
; Nazmi, K
; Uhrikova, D
; Funari, SS
; Coutinho, A
; Prieto, M
; Bolscher, J
in BIOPHYSICAL JOURNAL, 2010, ISSN: 0006-3495, Volume: 98,
Abstract, Indexed in: crossref, wos
1732.
Prediction of aqueous solubilities of solid carboxylic acids with COSMO-RS
Schroeder, B
; Santos, LMNBF
; Marrucho, IM
; Coutinho, JAP
in FLUID PHASE EQUILIBRIA, 2010, ISSN: 0378-3812, Volume: 289,
Article, Indexed in: crossref, scopus, wos
Abstract
The methodology for the prediction of aqueous solubilities of solid organic compounds, and their temperature dependence, based on the Conductor-like Screening Model for Real Solvents (COSMO-RS/COSMOtherm) procedure, is presented and evaluated. The predictive capability of the quantum chemistry based program and the applied methodology was tested on the most common solid carboxylic acids. From the temperature dependence of the solubilities, the mean apparent enthalpies of solution were derived. The results obtained for a set of 27 carboxylic acids, consisting of aromatic carboxylic acids, dicarboxylic acids, as well as hydroxycarboxylic acids, are in good agreement with the experimental solubility data and their dependence with the temperature. The mean apparent enthalpies of solution, although of the same order of magnitude of the experimentally values. seem to be systematically underestimated. The good response of the applied methodology based on CCSMOtherm/CCSMO-RS on the prediction of non-ideal aqueous solubilities demonstrate the capability of this approach to predict and distinguish the solubility trends and magnitude, resulting from the substituent effects on the non-ideality of the aqueous solution.
1733.
Experimental and Computational Studies on the Structural and Thermodynamic Properties of Two Sulfur Heterocyclic Keto Compounds
Freitas, VLS
; Gomes, JRB
; Gales, L
; Damas, AM
; da Silva, MDMCR
in JOURNAL OF CHEMICAL AND ENGINEERING DATA, 2010, ISSN: 0021-9568, Volume: 55,
Article, Indexed in: crossref, scopus, wos
Abstract
The present work reports the standard (p degrees = 0.1 MPa) molar enthalpies of formation in the gaseous phase of thioxanthone, (91.9 +/- 2.4) kJ.mol(-1), and tetrahydrothio-gamma-pyrone, (-164.6 +/- 2.0) kJ.mol(-1), at T = 298.15 K, derived from their standard molar energies of combustion and standard molar enthalpies of sublimation, measured by rotating-bomb combustion calorimetry and by the vacuum drop microcalorimetric technique, respectively. For comparison purposes, we performed additional standard ab initio molecular orbital calculations, using the G3(MP2)//B3LYP composite procedure, which were used for the calculation of the enthalpies of several homodesmotic reactions, allowing us to extract the standard molar enthalpies of formation, in the gaseous phase, of the two heterocycles considered in this work. The calculated results are in excellent agreement with the experimental data. The three-dimensional structure of the crystal tetrahydrothio-gamma-pyrone was also determined by X-ray crystallography.
1734.
Structure-Property-Activity Relationship of Phenolic Acids and Derivatives. Protocatechuic Acid Alkyl Esters
Reis, B
; Martins, M
; Barreto, B
; Milhazes, N
; Garrido, EM
; Silva, P
; Garrido, J
; Borges, F
in JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2010, ISSN: 0021-8561, Volume: 58,
Article, Indexed in: crossref, scopus, wos
Abstract
The esterification of hydrophilic phenolic antioxidants is an efficient approach to enhance their solubility in apolar media. Herein, structure property studies on the antiradical activity of a series of protocatechuic acid alkyl esters have been accomplished. The increase of the lipophilicity was shown to significantly improve the antioxidant activity of protocatechuic esters. Their efficiency as radical scavengers was evaluated using distinctive analytical methods, namely, 2,2-diphenyl-1-picrylhydrazyl (DPPH) UV/visible method, electrochemistry, and differential scanning calorimetry. All the new alkyl protocatechuate antioxidants studied possessed better radical-scavenging capacity than the natural antioxidant protocatechuic acid. This work has shown that the alkyl ester side chain markedly influences the lipophilicity of this type of phenolic system without disturbing the core of the molecule responsible for antioxidant activity. The data on the antioxidant activity obtained using the different analytical methods correlated well with each other and have revealed the interesting antioxidant potential of alkyl esters of protocatechuic acid.
1735.
Prediction of environmental parameters of polycyclic aromatic hydrocarbons with COSMO-RS
Schroeder, B
; Santos, LMNBF
; Rocha, MAA
; Oliveira, MB
; Marrucho, IM
; Coutinho, JAP
in CHEMOSPHERE, 2010, ISSN: 0045-6535, Volume: 79,
Article, Indexed in: crossref, scopus, wos
Abstract
The methodology for the prediction of properties of environmental relevance of polycyclic aromatic hydrocarbons based on the conductor-like screening model for real solvents (COSMO-RS/COSMOtherm) is presented and evaluated, with a special focus on the aqueous solubility of polycyclic aromatic hydrocarbons and related aromatic hydrocarbons (PAHs). It is shown that the solubility predictions as well as their temperature dependence obtained for a set of 12 polycyclic aromatic hydrocarbons and two related aromatic hydrocarbons are in good agreement with the experimental data. (Subcooled) Vapor pressures, Henry's law constants as well as octanol-water partition coefficients were also estimated and compared with experimental data showing the capability of the model to predict environmental related data with sufficient precision for practical purposes.
1736.
Partition of amphiphilic molecules to lipid bilayers by isothermal titration calorimetry
Moreno, MJ
; Bastos, M
; Velazquez Campoy, A
in ANALYTICAL BIOCHEMISTRY, 2010, ISSN: 0003-2697, Volume: 399,
Article, Indexed in: crossref, scopus, wos
Abstract
The partition of the amphiphile sodium dodecyl sulfate (SDS) between an aqueous solution and a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) bilayer was followed by isothermal titration calorimetry (ITC) as a function of the total concentration of SDS. It was found that the obtained partition coefficient is strongly affected by the ligand concentration, even after correction for the charge imposed in the bilayer by the bound SDS. The partition coefficient decreased as the total concentration of SDS increased, with this effect being significant for local concentrations of SDS in the lipid bilayer above 5 molar%. At those high local concentrations, the properties of the lipid bilayer are strongly affected, leading to nonideal behavior and concentration-dependent apparent partition coefficients. It is shown that with the modern ITC instruments available, the concentrations of SDS can be drastically reduced while maintaining a good signal-to-noise ratio. The intrinsic parameters of the interaction with unperturbed membranes can be obtained from the asymptotic behavior of the apparent parameters as a function of the ligand concentration for both nonionic and ionic solutes. A detailed analysis is performed, and a spreadsheet is provided to obtain the interaction parameters with and without correction for electrostatics.
1737.
Experimental and Computational Thermochemical Study of Sulfur-Containing Amino Acids: L-Cysteine, L-Cystine, and L-Cysteine-Derived Radicals. S-S, S-H, and C-S Bond Dissociation Enthalpies
Roux, MV
; Foces Foces, C
; Notario, R
; da Silva, MAVR
; da Silva, MDMC
; Santos, AFLOM
; Juaristi, E
in JOURNAL OF PHYSICAL CHEMISTRY B, 2010, ISSN: 1520-6106, Volume: 114,
Article, Indexed in: crossref, scopus, wos
Abstract
This paper reports an experimental and theoretical study of the standard (p degrees = 0.1 MPa) molar enthalpies of formation at T = 298.15 K of the sulfur-containing amino acids L-cysteine [CAS 52-90-4] and L-cystine [CAS 56-89-3]. The standard (p degrees = 0.1 MPa) molar enthalpies of formation of crystalline L-cysteine and L-cystine were calculated from the standard molar energies of combustion, in oxygen, to yield CO(2)(g) and H(2)SO(4)center dot 115H(2)O, measured by rotating-bomb combustion calorimetry at T = 298.15 K. The vapor pressures of L-cysteine were measured as function of temperature by the Knudsen effusion mass-loss technique. The standard molar enthalpy of sublimation, at T = 298.15 K, was derived from the Clausius-Clapeyron equation. The experimental values were used to calculate the standard (p degrees = 0.1 MPa) enthalpy of formation of L-cysteine in the gaseous phase, Delta(f)H(m)degrees(g) = -382.6 +/- 1.8 kJ.mol(-1). Due to the low vapor pressures of L-cystine and since this compound decomposes at the temperature range required for a possible sublimation, it was not possible to determine its enthalpy of sublimation. Standard ab initio molecular orbital calculations at the G3(MP2)//B3LYP and/or G3 levels were performed. Enthalpies of formation, using atomization and isodesmic reactions, were calculated and compared with experimental data. A value of -755 +/- 10 kJ.mol(-1) was estimated for the enthalpy of formation of cystine. Detailed inspections of the molecular and electronic structures of the compounds studied were carried out. Finally, bond dissociation enthalpies (BDE) of S-H, S-S, and C-S bonds, and enthalpies of formation of L-cysteine-derived radicals, were also computed.
1738.
Epigallocatechin-3-gallate (EGCG) binds to TTR and modulates its amyloidogenicity
Ferreira, N
; Cardoso, I
; Domingues, MR
; Vitorino, R
; Bastos, M
; Bai, G
; Saraiva, MJ
; Almeida, MR
in FEBS JOURNAL, 2010, ISSN: 1742-464X, Volume: 277,
Abstract, Indexed in: wos
1739.
H-1 NMR and Molecular Dynamics Evidence for an Unexpected Interaction on the Origin of Salting-In/Salting-Out Phenomena
Freire, MG
; Neves, CMSS
; Silva, AMS
; Santos, LMNBF
; Marrucho, IM
; Rebelo, LPN
; Shah, JK
; Maginn, EJ
; Coutinho, JAP
in JOURNAL OF PHYSICAL CHEMISTRY B, 2010, ISSN: 1520-6106, Volume: 114,
Article, Indexed in: crossref, handle, scopus, wos
Abstract
By employing H-1 NMR spectroscopy and molecular simulations, we provide an explanation for recent observations that the aqueous Solubilities of ionic liquids exhibit salting-out to salting-in regimes upon addition of distinct inorganic salt ions. Using a typical ionic liquid [1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide], we observed the existence of preferential specific interactions between the low electrical charge density ("apolar moiety") parts of the ionic liquid cation and the inorganic salts. These a priori unexpected interactions become increasingly favorable as one moves from salting-out to salting-in effects. More specifically, this interpretation is validated by distinct aqueous solution H-1 NMR data shifts in the ionic liquid cation upon inorganic salt addition. These shifts, which are well noted in the terminal and preterminal hydrogens of the alkyl chain appended to the imidazolium ring, correlate quantitatively with solubility data, both for cases where the nature of inorganic salt is changed, at constant concentration, and for those where the concentration of a given inorganic salt is varied. Molecular simulations have also been performed permitting us to garner a broader picture of the underlying mechanism and structure of this complex solvation phenomenon. These findings can now be profitably used to anticipate solution behavior upon inorganic salt addition well beyond the specificity of the ionic liquid solutions, i.e., for a diversity of distinct solutes differing in chemical nature.
1740.
The role of aromatic interactions in the structure and energetics of benzyl ketones
Lima, CFRAC
; Sousa, CAD
; Rodriguez Borges, JE
; Melo, A
; Gomes, LR
; Low, JN
; Santos, LMNBF
in PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, ISSN: 1463-9076, Volume: 12,
Article, Indexed in: crossref, scopus, wos
Abstract
A qualitative and quantitative energetic and structural study of dibenzyl ketone (DBK) and benzyl ethyl ketone (BEK) was carried out in order to obtain insights into the type and magnitude of aromatic interactions that these systems present in their different phases. The crystal structure of DBK was obtained by X-ray crystallography, and it shows that the conformation adopted in the crystalline state is governed by the intermolecular interactions. The standard (p(0) = 10(5) Pa) molar enthalpy of formation in the gaseous state at T = 298.15 K was derived by Calvet and combustion calorimetry. Using a homodesmic reaction scheme, the first calorimetric evaluation of the interaction enthalpy between two stacked phenyl rings is presented. A stabilizing enthalpic effect of (12.9 +/- 4.9) kJ mol(-1) associated with the intramolecular pi-pi interaction in DBK was found. The gas phase intramolecular pi ... pi interaction in DBK is in agreement with quantum chemical calculations at B3LYP/6-311++ G(d, p) and MP2 with various basis-sets. An intramolecular pi ... pi interaction in DBK and a weak C-H ... pi interaction in BEK were found by variable-temperature (1)H-NMR spectroscopy in MeOD. These observations are consistent with a hindered rotor interpretation, supported by ab initio calculations for the gas phase at the MP2/cc-pVDZ level. The global results indicate a distinct molecular structure on going from crystalline DBK to liquid, gas, and solution phases, ruled by the overall contribution of the intra- and intermolecular interactions.