Publications

Abstract The desorption of a self-assembled monolayer (SAM) of 11-amino-1-undecanethiol (AUT) formed on an Au polycrystalline electrode was investigated with the purpose of establishing the most efficient method for SAM removal prior to electrode re-Use. The cleanliness of the surface was evaluated by assessing the characteristics (and their reproducibility) of a newly prepared SAM (on a freshly cleaned electrode) in the presence of Ru(NH3)(6)(3+/2+) probe species. The simple flame annealing of the modified electrodes showed poor reproducibility. Later, cleaning treatments based on previous reports about the electrochemical desorption of SAMs, were investigated in NaOH, HClO4, and KCl solutions. The anodic removal in alkaline and chloride solutions was not efficient enough due to the effect of the Au surface oxidation and dissolution. The commonly used reductive desorption in alkaline solution did also not offer a high efficiency (in contrast with the behavior described in those reports) probably due to the low stability of the thiolate molecules at high-pH values. In addition, such procedures did not provide a way to visualize the evolution of the process. The oxidative desorption in perchloric acid showed a higher efficiency at each single desorption cycle, and allowed to monitor the extension of the removal by comparing the cyclic voltammograms obtained in that medium with the expected fingerprint for the bare Au. However the voltammetric characterization of new AUT films, prepared on such electrochemically treated surfaces by re-incubation in the AUT solution, showed that the conditions of substrate cleanliness and smoothness necessaries to reproduce a close-packed and compact AUT monolayer were not reached. A new cleaning strategy based on the coupled use of oxidative removal in HClO4 0.1 M and flame annealing showed to be efficient and reproducible, providing the proper substrate precursors for the formation of highly ordered AUT films. The results also showed that the methodology works well in the removal of other SAMs like the one formed by the neutral 1-dodecanethiol (1-DT).

Abstract Surgical adhesives consist on an attractive alternative to suturing or stapling since they can accomplish other tasks, such as haemostasis and the ability to seal air leakages. The application of adhesives would also reduce the surgeries procedure time since they represent an easier and faster method to establish tissue adhesion. The aim of this work was the development of a biodegradable urethane pre-polymer that presents the capacity of reacting with the amino groups present in the biological molecules. Urethanes based on polycaprolactone diol (PCL) were synthesized by reaction of the molecule either with isophorone diisocyanate (IPD-isocyanate) or hexamethylene diisocyanate (HDI-isocyanate). The characterization of the materials was accomplished by: ATR-FTIR (Attenuated Total Reflectance-Fourier Transform Infrared), determination of swelling capacity, stability of NCO groups in the presence of humidity conditions, reaction with aminated substrates (as a simulation of the living tissues) and determination of surface energy by contact angle measurement. The haemocompatibility of the PU was also evaluated by thrombosis and haemolysis tests.

Abstract Impedance spectra (50 kHz-1 Hz) were acquired and used to obtain the differential capacitance at the interfaces between 1-butyl-3-methylimidazolium hexafluorophosphate, [BMIM][PF6] ionic liquid and three different electrode materials (Hg, Pt, and glassy carbon (GC)) as a function of the applied potential. The electrocapillary curve for the Hg/[BMIM][PF6] interface was obtained from drop time measurements, from which the potential of zero charge was calculated to be -0.39 V (Ag wire). The potential of zero charge is 0.30 V less negative than the potential of differential capacitance minimum. This disagreement suggests that the differential capacitance minimum is not related to a classical diffuse layer minimum. Additional support to this conclusion was obtained from positive temperature coefficient for the differential capacitance in contrast to the negative temperature predicted by the classic Gouy-Chapman model. The results do not support the recent model predictions of bell shaped capacitance curves for room temperature ionic liquids, RTILs.

Abstract Mixtures of cationic and anionic surfactants (catanionic mixtures) are often highly non-ideal, exhibiting strong synergism in their interfacial properties, manifested for instance in significant reduction of the mixture critical micelle concentration (cmc) and enhanced adsorption onto surfaces. The magnitude of such effects is of fundamental interest and has important application-related uses (e.g. in detergent formulation). In this work, the micellization process of mixtures of cationic gemini surfactants of the alkanediyl-alpha,omega-bis (alkyl dimethylammonium bromide) type, denoted by 12-n-12 (where it is the spacer length), with several common anionic surfactants has been investigated by electric conductivity. For the purpose of comparison. cationic-cationic mixtures, where dodecyltrimethylammonium bromide is the second cationic surfactant, have also been investigated. The cationic/anionic mixtures show relatively significant deviations from ideal behavior, depending on the structure of the gemini surfactant and the anionic surfactant. The interaction parameter beta(12), within Rubingh's non-ideal model for mixed micelles, has been calculated for each mixture, as well as the mixed micelle composition as a function of mixture composition. The observed synergism in the different mixtures is interpreted in terms of the molecular structure of the surfactants and corresponding head-head and chain-chain interactions.

Abstract The development of the complex network graphs permits us to describe any real system such as social, neural, computer or genetic networks by transforming real properties in topological indices (TIs). This work uses Randic's star networks in order to convert the protein primary structure data in specific topological indices that are used to construct a natural/random protein classification model. The set of natural proteins contains 1046 protein chains selected from the pre-compiled CulledPDB list from PISCES Dunbrack's Web Lab. This set is characterized by a protein homology of 20%, a structure resolution of 1.6 angstrom and R-factor lower than 25%. The set of random amino acid chains contains 1046 sequences which were generated by Python script according to the same type of residues and average chain length found in the natural set. A new Sequence to Star Networks (S2SNet) wxPython GUI application (with a Graphviz graphics back-end) was designed by our group in order to transform any character sequence in the following star network topological indices: Shannon entropy of Markov matrices, trace of connectivity matrices, Harary number, Wiener index, Gutman index, Schultz index, Moreau-Broto indices, Balaban distance connectivity index, Kier-Hall connectivity indices and Randic connectivity index. The model was constructed with the General Discriminant Analysis methods from STATISTICA package and gave training/predicting set accuracies of 90.77% for the forward stepwise model type. In conclusion, this study extends for the first time the classical TIs to protein star network TIs by proposing a model that can predict if a protein/fragment of protein is natural or random using only the amino acid sequence data. This classification can be used in the studies of the protein functions by changing some fragments with random amino acid sequences or to detect the fake amino acid sequences or the errors in proteins. These results promote the use of the S2SNet application not only for protein structure analysis but also for mass spectroscopy, clinical proteomics and imaging, or DNA/RNA structure analysis.

Abstract Fura-2 is one of the most commonly used fluorescent dyes to analyze the cytosolic Ca(2+) concentration ([Ca(2+)](i)) of living cells. Fura-2-dependent measurements of [Ca(2+)](i) are susceptible to changes of pH, reactive oxygen species concentration and membrane potential. Fura-2 is often loaded over the lipophilic cell membrane into the cytosol of a cell in its esterified form (Fura-2/AM) which is then cleaved by endogenous esterases. We have analyzed the electrochemical properties of Fura-2/AM and Fura-2 salt by cyclic voltammetry ("three-phase" and "thin-film" electrode methods). Using Fura-2/AM as a redox facilitator, we were able to mimic the transport of various ions across a lipophilic barrier. We show that Fura-2/AM in this biomimetic set-up can be reversibly oxidized in a single electrochemical step. Its redox reaction was highly proton sensitive in buffers with pH <= 6. At physiological pH of around 7.0, the oxidation of Fura-2/AM was coupled to an uptake of mono-anions across the liquid-liquid interface. The voltage-dependence of the redox cycle was sensitive to the free Ca(2+) concentration, either after de-esterification of Fura-2/AM, or when Fura-2 salt was used. The complex between Fura-2 and Ca(2+) ions is ionic (complexation occurs via the dissociated negative groups of Fura forms), while the redox transformations in Fura-2 occurs at the nitrogen atoms of the amino groups. Our results suggest that redox transformations of the Fura-2 forms do not affect the binding ability toward Ca(2+) ions and thus do not interfere with [Ca(2+)](i) measurements.

Abstract The inhibition mechanisms of the firefly luciferase (Luc) by the two major products of the reactions catalysed by Luc, oxyluciferin and dehydroluciferyl-adenylate (L-AMP), were investigated. Light production in the presence and absence of these inhibitors (0.5 to 2 mu M oxyluciferin; 0.0025 to 1.25 mu M L-AMP) has been measured in 50 mM Hepes buffer (pH = 7.5), 10 nM Luc, 250 mu M ATP and D-Luciferin (from 3.75 up to 120 mu M). Nonlinear regression analysis with the appropriate kinetic models (Henri-Michaelis-Menten and Williarn-Morrison equations) reveals that oxyluciferin is a competitive inhibitor of luciferase (K-i = 0.50 +/- 30.03 mu M) while L-AMP act as a tight-binding competitive inhibitor (K-i = 3.8 +/- 0.7 nM). The K-m values obtained both for oxyluciferin and L-AMP were 14.7 +/- 0.7 and 14.9 +/- 0.2 mu M, respectively. L-AMP is a stronger inhibitor of Luc than oxyluciferin and the major responsible for the characteristic flash profile of in vitro Luc biolumincscence.

Abstract The derivatives of 1,4-benzodioxan are found widely spread in nature and have great biomedical importance. The present work reports ail experimental and Computational study on the thermochemistry of 1,4-benzodioxan and several of its 6-R derivatives in the gaseous phase, at T = 298.15 K. Our current results were obtained from measurements of combustion energies, at T = 298.15 K, using a static bomb calorimeter. The standard molar enthalpies of vaporization/sublimation were measured by Calvet microcalorimetry and corrected to T = 298.15 K. Additionally, estimates were performed of the enthalpies of formation of all the studied compounds in the gas phase, using DFT and other more accurate correlated calculations, together with appropriate isodesmic or homodesmic reactions. There is a reasonable agreement between computational and experimental results.

Abstract The standard molar energies of combustion, at T = 298.15 K, of crystalline 1,4-benzodioxan-2-carboxylic acid and 1,4-benzodioxan-2-hydroxymethyl were measured by static bomb calorimetry in an oxygen atmosphere. The standard molar enthalpies of sublimation, at T = 298.15 K, were obtained by Calvet microcalorimetry. These values were used to derive the standard molar enthalpies of formation of the compounds in the gas phase at T = 298.15 K: 1,4-benzodioxan-2-carboxylic acid -(547.7 +/- 3.0)kJ.mol(-1) and 1,4-benzodioxan-2-hydroxymethyl -(374.2 +/- 2.3)kJ.mol(-1). In addition, density functional theory calculations using the B3LYP hybrid exchange-correlation energy functional with extended basis sets, 6-31IG(center dot center dot) and cc-pVTZ, have been performed for the compounds studied. We have also tested two more accurate computational procedures involving multiple levels of electron structure theory in order to get reliable estimates of the thermochemical parameters of the compounds studied. The agreement between experiment and theory gives confidence to estimate the enthalpies of formation of other 2-R derivatives of 1,4-benzodioxan (R = -CH(2)COOH, -OH, -COCH(3), -CHO, -CH(3), -CN, and -NO(2)).

Abstract Amino acid-derived gemini surfactants arise as a potentially good alternative to the more conventional lipid and synthetic catanionic systems in view of their enhanced interfacial properties, increased chemical stability, and low toxicity. The presence of an amino acid as the polar headgroup allows toxicity reduction, with the simultaneous increase of biodegradability. For these compounds, the establishment of structure/function relationships from the assessment of their basic aggregation properties is therefore of the utmost interest, e.g., in the design of operative self-assembled systems (e.g., liposomes, nanotubes, etc). In this context, the study of the thermal phase behavior of the dry surfactants is a natural, straightforward first step, the more so as thermotropic liquid crystals are also relevant for practical applications. In this work, several lysine-based amphiphiles with a gemini-like configuration have been synthesized, with the amino acid side chain as the spacer group. The molecules are either esters (neutral, with C6-C12 even chains) or sodium carboxylates (anionic, with C6-C12 even chains). Upon increasing the temperature, different crystalline (cr) and liquid-crystalline (1c) phases have been detected and the corresponding thermodynamic and structural parameters determined by a combination of differential scanning calorimetry, polarizing light microscopy and small-angle X-ray scattering. The phase behavior of the amphiphiles is highly dependent on both the chain length and the presence of charge on the headgroup, with significant differences occurring within and between each group of molecules. The C6 and C8 esters form reverse hexagonal cr and lc phases, while C10 and C12 self-assemble into smectic cr and lc structures, with C10 showing also a reverse hexagonal lc phase prior to isotropization. All the carboxylate derivatives form smectic lc phases at high enough temperature prior to isotropization. The rationalization of the phase behavior and phase transition energetics of the compounds has been put forth on the basis of the intermolecular interactions at stake (van der Waals, H-bonding, electrostatic, and packing) and the molecular shape of the amphiphile.