Showing: 10 from total: 2421 publications
1441. Recent advances in the theoretical research of the firefly multicolor bioluminescence
da Silva, LP ; Esteves da Silva, JCGE
in LUMINESCENCE, 2012, ISSN: 1522-7235,  Volume: 27, 
Abstract,  Indexed in: wos 

1442. Differential capacitance of liquid/liquid interfaces of finite thicknesses: a finite element study
Momotenko, D ; Pereira, CM ; Girault, HH
in PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2012, ISSN: 1463-9076,  Volume: 14, 
Article,  Indexed in: crossref, scopus, wos 
Abstract Finite element simulations were used to investigate the effect of a smooth variation of permittivity across a polarized liquid/liquid interface on the differential capacitance. The results show that a relative permittivity profile can account for the variation of ion solvation in the interfacial region, and therefore upon the diffuse double layer itself. The width and the symmetry of this profile across the interface are shown to be crucial parameters for interfacial distributions and fitting of capacitance data has been used to estimate the width of the interfacial region.

1443. Computational investigation of the Photinus pyralis luciferase-oxyluciferin system
da Silva, LP ; Esteves da Silva, JCGE
in LUMINESCENCE, 2012, ISSN: 1522-7235,  Volume: 27, 
Abstract,  Indexed in: wos 

1444. Antioxidants and stroke: Success and pitfalls
Roleira, FMF ; Tavares da Silva, EJ ; Garrido, J ; Borges, F
in Translational Stroke Research: From Target Selection to Clinical Trials, 2012,
Book Chapter,  Indexed in: crossref, scopus 
Abstract Stroke is a problem that affects more than 15 million people worldwide. It is the third most common cause of death and is also an important cause of morbidity and of severe long-term disability. In this chapter, stroke mechanisms are outlined and particular attention is given to the oxidative and nitrosative stress, essentially to the role of the reactive oxygen (ROS) and nitrogen (RNS) species in stroke events. Following this approach, the most recent literature relative to success and pitfalls of the use of antioxidants of natural (including endogenous and those from diet) or synthetic origin in stroke is herein reviewed. Antioxidant therapies have enjoyed general success in preclinical studies, across disparate animal models, but little benefit in human intervention studies or clinical trials. This mismatch has been often attributed both to limitations of the animal models and to pitfalls in the clinical trial design. Finally, some ADME/Tox problems related to a number of drawbacks were also discussed. © Springer Science+Business Media, LLC 2012.

1445. Effects of two atmospheric pollutants (SO2 and NO2) on protein content and allergenic properties of Acer negundo L. pollen
Sousa, R ; Duque, L ; Ribeiro, H ; Abreu, I ; Duarte, A ; Gomes, C ; Cruz, A ; Esteves da Silva, JE
in ALLERGY, 2012, ISSN: 0105-4538,  Volume: 67, 
Abstract,  Indexed in: wos 

1446. Direct and continuous dissolved CO2 monitoring in shallow raceway systems: From laboratory to commercial-scale applications
Borges, MT ; Domingues, JO ; Jesus, JM ; Pereira, CM
in AQUACULTURAL ENGINEERING, 2012, ISSN: 0144-8609,  Volume: 49, 
Article,  Indexed in: crossref, scopus, wos 
Abstract Direct and continuous measurement of dissolved CO2 (dCO(2)) is crucial for intensive aquaculture, especially in shallow raceway systems (SRS). In this work the performance of a portable dissolved CO2 probe analyzer was tested for the effects of different aqueous solutions, pure oxygen injection and agitation. Laboratory results showed significant (p < 0.05) solution effects on probe performance for low (10-20 mg L-1) and high (30-50 mg L-1) dCO(2) concentrations. Globally performance was better in deionized water, followed by marine fish farm water and artificial seawater. Accuracy and response time were the parameters most affected by the type of solution tested. Linearity was always observed (R-2 = 0.995-0.999). The probe was sensitive to 1 mg L-1 dCO(2) increments for concentrations <6 mg L-1 in artificial seawater. Pure oxygen injection did not affect probe readouts, and agitation was needed for better accuracy and response time. In real marine SRS with tanks in series dCO(2) dynamics was revealed using the probe coupled to a developed flow cell. A prototype SRS was built and used to study dCO(2) dynamics without endangering cultivated fish. Generally, results obtained indicate that the probe tested although precise, is better suited for discrete, single-point dCO(2) monitoring, being a limited resource for the special needs of shallow raceway systems. As SRS represent a paradigm change in aquaculture, new water quality monitoring strategies and instrumentation are needed, especially for dCO(2). Fiber optic sensors can be a solution for continuous, multipoint monitoring, thus contributing to the understanding of water quality dynamics in hyperintensive aquaculture systems.

1447. Firefly Chemiluminescence and Bioluminescence: Efficient Generation of Excited States
da Silva, LP ; Esteves da Silva, JCGE
in CHEMPHYSCHEM, 2012, ISSN: 1439-4235,  Volume: 13, 
Article,  Indexed in: crossref, scopus, wos 
Abstract Firefly luciferase catalyzes a light-emitting reaction in which an excited-state product is formed. Both experimental and theoretical methodologies are used to study this system, and the reactions catalyzed by luciferase are relatively well characterized. However, the mechanism by which an excited-state product is formed is still unknown. This Minireview deals with the current understanding of firefly bioluminescence and chemiluminescence. Thermal decomposition of simple 1,2-dioxetanes is also discussed, due to their role in formation of the excited-state bioluminophore.

1448. Aggregation-induced conformational transitions in bovine beta-lactoglobulin adsorbed onto open chitosan structures
Borges, J ; Campina, JM ; Souza, HKS ; Goncalves, MP ; Fernando Silva, AF
in SOFT MATTER, 2012, ISSN: 1744-683X,  Volume: 8, 
Article,  Indexed in: crossref, scopus, wos 
Abstract Chitosan is a natural polysaccharide which strongly interacts with whey proteins in solution. Certain protein-polyelectrolyte complexes and electrostatically assembled thin films have been shown to be good platforms for the preservation of globular and small proteins in their native state mainly due to the hydrophilic nature of these polyelectrolytes and to the lack of physical space for embedded proteins to relax. As a consequence, the use of natural polyelectrolytes in new nanocomposite materials for medicine, chemical analysis, catalysis, etc. has exploded in the last few years. Nevertheless, in many of these applications proteins are immobilized in more open structures without physical restrictions to undergo conformational changes. In this work, we investigate the nature of these transitions for a model whey protein, beta-LG, on a chitosan-decorated Au surface in a scenario for which protein-surface interactions compete with boosted protein-protein non-coulombic forces. The adsorption kinetics, protein mass uptake (plus associated water), and flexibility of the adsorbed layers have been followed in situ by the quartz crystal microbalance with dissipation monitoring (QCM-D). Further ex situ characterization has been performed by atomic force microscopy (AFM) and non-invasive scanning electron microscopy (SEM). The balance between both types of interactions yielded surfaces heavily loaded with protein and water in which orientational transitions seemed restricted. The kinetics of the process was registered in a wide range of concentrations and successfully fitted to a double exponential equation derived from the RSA theory accounting for the establishment of slow post-adsorption conformational transitions.

1449. Paradigms and paradoxes: en route to the understanding of the aromaticity of the "iso-species" isobenzofuran, anthranil, benzofurazan and 2,1,3-benzothiadiazole
Miranda, MS ; Matos, MAR ; Morais, VMF ; Liebman, JF
in STRUCTURAL CHEMISTRY, 2012, ISSN: 1040-0400,  Volume: 23, 
Article,  Indexed in: crossref, scopus, wos 
Abstract Using a model reaction, we recently investigated the thermochemistry and aromaticity systematics of nitrogen, oxygen and sulfur-containing heterocycles that are isoelectronic to the carbocyclic indane and its unsaturated counterpart indene. In this study all of the benzo-annelated species, e.g. indole, indoline, phthalic anhydride, phthalan and benzothiazole, all corresponding to annelation on a formal double bond of the 5-membered ring of the single ring species. In that study we asked "What is to be done about the so-called iso-species?" such as isobenzofuran, anthranil, benzofurazan and 2,1,3-benzothiadiazole, wherein it is annelation of the formal single bond in the 5-membered ring. A modified model reaction is suggested in the current paper where we admit that it is quantitatively untested.

1450. Density functional theory study of 1,2-dioxetanone decomposition in condensed phase
da Silva, LP ; Esteves da Silva, JCGE
in JOURNAL OF COMPUTATIONAL CHEMISTRY, 2012, ISSN: 0192-8651,  Volume: 33, 
Article,  Indexed in: crossref, scopus, wos 
Abstract The decomposition of 1,2-dioxetanone into a CO2 molecule and into an excited state formaldehyde molecule was studied in condensed phase, using a density functional theory approach. Singlet and triplet ground and excited states were all included in the calculations. The calculations revealed a novel mechanism for the chemiluminescence of this compound. The triplet excitation can be explained by two intersystem crossings (ISCs) with the ground state, while the singlet excitation can be accounted by an ISC with the triplet state. The experimentally verified small excitation yield can then be explained by the presence of an energy barrier present in the potential energy surface of the triplet excited state, which will govern both triplet and singlet excitation. It was also found that the triplet ground state interacts with both the triplet excited and singlet ground states. A MPWB1K/mPWKCIS approach provided results in agreement with the existent literature. (c) 2012 Wiley Periodicals, Inc.